Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx1P13297 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Msx1P13297 Gm12527-201ENSMUST00000117967 564 ntBASIC17.87■□□□□ 0.45
Msx1P13297 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.87■□□□□ 0.45
Msx1P13297 Mir7071-201ENSMUST00000184847 69 ntBASIC17.87■□□□□ 0.45
Msx1P13297 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.87■□□□□ 0.45
Msx1P13297 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx1P13297 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Msx1P13297 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Msx1P13297 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.86■□□□□ 0.45
Msx1P13297 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.86■□□□□ 0.45
Msx1P13297 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx1P13297 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx1P13297 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Msx1P13297 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Msx1P13297 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.85■□□□□ 0.45
Msx1P13297 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Msx1P13297 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Msx1P13297 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Msx1P13297 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.84■□□□□ 0.45
Msx1P13297 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
Msx1P13297 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msx1P13297 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msx1P13297 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Msx1P13297 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Msx1P13297 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.83■□□□□ 0.44
Msx1P13297 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.83■□□□□ 0.44
Msx1P13297 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.83■□□□□ 0.44
Msx1P13297 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.83■□□□□ 0.44
Msx1P13297 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msx1P13297 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msx1P13297 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Msx1P13297 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.82■□□□□ 0.44
Msx1P13297 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Msx1P13297 Gm7290-201ENSMUST00000104990 617 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Gm12918-201ENSMUST00000120234 636 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Gm15710-201ENSMUST00000121821 636 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Msx1P13297 Gm5075-201ENSMUST00000196916 622 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Gm5408-201ENSMUST00000197998 747 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msx1P13297 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.82■□□□□ 0.44
Msx1P13297 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.82■□□□□ 0.44
Msx1P13297 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msx1P13297 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msx1P13297 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msx1P13297 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msx1P13297 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.81■□□□□ 0.44
Msx1P13297 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.81■□□□□ 0.44
Msx1P13297 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.81■□□□□ 0.44
Msx1P13297 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msx1P13297 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.8■□□□□ 0.44
Msx1P13297 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.8■□□□□ 0.44
Msx1P13297 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.8■□□□□ 0.44
Msx1P13297 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msx1P13297 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.79■□□□□ 0.44
Msx1P13297 Gm13148-201ENSMUST00000118892 745 ntBASIC17.79■□□□□ 0.44
Msx1P13297 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.79■□□□□ 0.44
Msx1P13297 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Msx1P13297 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.79■□□□□ 0.44
Msx1P13297 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Msx1P13297 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.79■□□□□ 0.44
Msx1P13297 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Msx1P13297 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 86.4 ms