Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
Nr1i3O35627 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.32■□□□□ 0.84
Nr1i3O35627 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1i3O35627 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.32■□□□□ 0.84
Nr1i3O35627 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Nr1i3O35627 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.31■□□□□ 0.84
Nr1i3O35627 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Nr1i3O35627 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1i3O35627 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.3■□□□□ 0.84
Nr1i3O35627 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Gm27454-201ENSMUST00000185090 204 ntBASIC20.3■□□□□ 0.84
Nr1i3O35627 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Nr1i3O35627 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1i3O35627 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.29■□□□□ 0.84
Nr1i3O35627 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Nr1i3O35627 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Nr1i3O35627 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Gm6139-201ENSMUST00000079261 882 ntBASIC20.29■□□□□ 0.84
Nr1i3O35627 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.29■□□□□ 0.84
Nr1i3O35627 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Nr1i3O35627 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1i3O35627 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1i3O35627 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
Nr1i3O35627 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1i3O35627 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.28■□□□□ 0.84
Nr1i3O35627 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1i3O35627 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1i3O35627 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1i3O35627 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Nr1i3O35627 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.27■□□□□ 0.84
Nr1i3O35627 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
Nr1i3O35627 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.27■□□□□ 0.84
Nr1i3O35627 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.27■□□□□ 0.84
Nr1i3O35627 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1i3O35627 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Nr1i3O35627 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Nr1i3O35627 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Nr1i3O35627 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1i3O35627 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1i3O35627 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1i3O35627 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.26■□□□□ 0.83
Nr1i3O35627 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1i3O35627 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
Nr1i3O35627 Gm26833-201ENSMUST00000180899 440 ntBASIC20.25■□□□□ 0.83
Nr1i3O35627 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.25■□□□□ 0.83
Nr1i3O35627 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.25■□□□□ 0.83
Nr1i3O35627 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.25■□□□□ 0.83
Nr1i3O35627 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1i3O35627 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms