Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav1A0A075B5Z4 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav1A0A075B5Z4 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav1A0A075B5Z4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav1A0A075B5Z4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav1A0A075B5Z4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav1A0A075B5Z4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav1A0A075B5Z4 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Trav1A0A075B5Z4 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.58■□□□□ 0.41
Trav1A0A075B5Z4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav1A0A075B5Z4 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.58■□□□□ 0.41
Trav1A0A075B5Z4 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Gm43017-201ENSMUST00000198296 752 ntBASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav1A0A075B5Z4 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav1A0A075B5Z4 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav1A0A075B5Z4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav1A0A075B5Z4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav1A0A075B5Z4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav1A0A075B5Z4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms