Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cdc40Q9DC48 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdc40Q9DC48 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdc40Q9DC48 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdc40Q9DC48 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdc40Q9DC48 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdc40Q9DC48 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.55■□□□□ 0.4
Cdc40Q9DC48 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Gm27801-201ENSMUST00000184174 223 ntBASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Reep4-203ENSMUST00000226563 1444 ntBASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdc40Q9DC48 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdc40Q9DC48 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdc40Q9DC48 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdc40Q9DC48 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdc40Q9DC48 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.52■□□□□ 0.39
Cdc40Q9DC48 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Cdc40Q9DC48 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdc40Q9DC48 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.51■□□□□ 0.39
Cdc40Q9DC48 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdc40Q9DC48 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms