Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
Ddx55Q6ZPL9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
Ddx55Q6ZPL9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx55Q6ZPL9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC21.76■■□□□ 1.07
Ddx55Q6ZPL9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.76■■□□□ 1.07
Ddx55Q6ZPL9 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx55Q6ZPL9 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Ddx55Q6ZPL9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Gm15565-201ENSMUST00000118890 427 ntBASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx55Q6ZPL9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Gm9484-201ENSMUST00000195892 1159 ntBASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx55Q6ZPL9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Gm15378-201ENSMUST00000121894 207 ntBASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx55Q6ZPL9 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Mir1199-201ENSMUST00000117015 119 ntBASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Gm37055-201ENSMUST00000191866 133 ntBASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx55Q6ZPL9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx55Q6ZPL9 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ddx55Q6ZPL9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx55Q6ZPL9 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx55Q6ZPL9 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms