Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cdh11P55288 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cdh11P55288 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cdh11P55288 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cdh11P55288 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Cdh11P55288 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
Cdh11P55288 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Spcs1-204ENSMUST00000226782 949 ntBASIC17.21■□□□□ 0.35
Cdh11P55288 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdh11P55288 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.2■□□□□ 0.34
Cdh11P55288 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.2■□□□□ 0.34
Cdh11P55288 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
Cdh11P55288 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdh11P55288 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Cdh11P55288 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cdh11P55288 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Cdh11P55288 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
Cdh11P55288 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdh11P55288 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.18■□□□□ 0.34
Cdh11P55288 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Cdh11P55288 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Cdh11P55288 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.18■□□□□ 0.34
Cdh11P55288 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.18■□□□□ 0.34
Cdh11P55288 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.18■□□□□ 0.34
Cdh11P55288 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Cdh11P55288 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Cdh11P55288 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Cdh11P55288 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdh11P55288 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.18■□□□□ 0.34
Cdh11P55288 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.17■□□□□ 0.34
Cdh11P55288 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.17■□□□□ 0.34
Cdh11P55288 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdh11P55288 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Cdh11P55288 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.16■□□□□ 0.34
Cdh11P55288 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdh11P55288 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms