Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Gm13146-201ENSMUST00000118508 780 ntBASIC17.15■□□□□ 0.34
Lmx1bO88609 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Lmx1bO88609 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Lmx1bO88609 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Lmx1bO88609 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Lmx1bO88609 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Lmx1bO88609 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.14■□□□□ 0.33
Lmx1bO88609 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Gm12933-201ENSMUST00000120203 872 ntBASIC17.14■□□□□ 0.33
Lmx1bO88609 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Lmx1bO88609 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lmx1bO88609 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Lmx1bO88609 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Lmx1bO88609 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.13■□□□□ 0.33
Lmx1bO88609 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.13■□□□□ 0.33
Lmx1bO88609 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Lmx1bO88609 AC112142.1-201ENSMUST00000228796 918 ntBASIC17.13■□□□□ 0.33
Lmx1bO88609 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lmx1bO88609 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Gm27011-201ENSMUST00000182352 972 ntBASIC17.12■□□□□ 0.33
Lmx1bO88609 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.12■□□□□ 0.33
Lmx1bO88609 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Lmx1bO88609 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.11■□□□□ 0.33
Lmx1bO88609 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Lmx1bO88609 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lmx1bO88609 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Gm6420-201ENSMUST00000193885 723 ntBASIC17.1■□□□□ 0.33
Lmx1bO88609 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lmx1bO88609 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Lmx1bO88609 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.09■□□□□ 0.33
Lmx1bO88609 Nespas-201ENSMUST00000143738 1083 ntBASIC17.09■□□□□ 0.33
Lmx1bO88609 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.09■□□□□ 0.33
Lmx1bO88609 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Lmx1bO88609 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lmx1bO88609 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms