Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Spcs1-204ENSMUST00000226782 949 ntBASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Gm9847-201ENSMUST00000052528 599 ntBASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdk5rap3Q99LM2 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cdk5rap3Q99LM2 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdk5rap3Q99LM2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdk5rap3Q99LM2 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cdk5rap3Q99LM2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
Cdk5rap3Q99LM2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Gm43137-201ENSMUST00000198052 594 ntBASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdk5rap3Q99LM2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdk5rap3Q99LM2 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdk5rap3Q99LM2 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms