Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Rfx3P48381 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Rfx3P48381 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
Rfx3P48381 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.15■□□□□ 0.34
Rfx3P48381 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Rfx3P48381 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Rfx3P48381 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.15■□□□□ 0.34
Rfx3P48381 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx3P48381 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Rfx3P48381 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Rfx3P48381 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Rfx3P48381 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Rfx3P48381 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx3P48381 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Rfx3P48381 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC17.13■□□□□ 0.33
Rfx3P48381 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.13■□□□□ 0.33
Rfx3P48381 Gm43137-201ENSMUST00000198052 594 ntBASIC17.13■□□□□ 0.33
Rfx3P48381 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Rfx3P48381 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx3P48381 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Rfx3P48381 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.12■□□□□ 0.33
Rfx3P48381 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Rfx3P48381 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx3P48381 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Rfx3P48381 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC17.11■□□□□ 0.33
Rfx3P48381 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.11■□□□□ 0.33
Rfx3P48381 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Rfx3P48381 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx3P48381 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.1■□□□□ 0.33
Rfx3P48381 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.1■□□□□ 0.33
Rfx3P48381 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rfx3P48381 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rfx3P48381 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.1■□□□□ 0.33
Rfx3P48381 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx3P48381 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Rfx3P48381 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Rfx3P48381 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx3P48381 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx3P48381 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms