Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Pcdhgb8A0A140LI48 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Pcdhgb8A0A140LI48 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm8493-201ENSMUST00000196881 489 ntBASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdhgb8A0A140LI48 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdhgb8A0A140LI48 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdhgb8A0A140LI48 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Grk6-206ENSMUST00000224995 2971 ntBASIC17.07■□□□□ 0.32
Pcdhgb8A0A140LI48 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms