Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.83■□□□□ 0.6
Lima1Q9ERG0 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lima1Q9ERG0 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Golgb1-201ENSMUST00000023534 498 ntBASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Lima1Q9ERG0 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lima1Q9ERG0 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.8■□□□□ 0.6
Lima1Q9ERG0 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.8■□□□□ 0.6
Lima1Q9ERG0 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.8■□□□□ 0.6
Lima1Q9ERG0 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Lima1Q9ERG0 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Lima1Q9ERG0 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.77■□□□□ 0.6
Lima1Q9ERG0 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Lima1Q9ERG0 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.77■□□□□ 0.59
Lima1Q9ERG0 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms