Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Usp47Q8BY87 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC27.2■■□□□ 1.95
Usp47Q8BY87 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
Usp47Q8BY87 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp47Q8BY87 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp47Q8BY87 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC27.2■■□□□ 1.94
Usp47Q8BY87 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp47Q8BY87 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp47Q8BY87 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Usp47Q8BY87 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Usp47Q8BY87 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Usp47Q8BY87 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC27.17■■□□□ 1.94
Usp47Q8BY87 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Usp47Q8BY87 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp47Q8BY87 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp47Q8BY87 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Hsf1-204ENSMUST00000226872 2104 ntBASIC27.15■■□□□ 1.94
Usp47Q8BY87 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp47Q8BY87 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
Usp47Q8BY87 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Usp47Q8BY87 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC27.14■■□□□ 1.93
Usp47Q8BY87 Gm5540-201ENSMUST00000131852 1848 ntBASIC27.14■■□□□ 1.93
Usp47Q8BY87 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
Usp47Q8BY87 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
Usp47Q8BY87 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Usp47Q8BY87 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Gm13148-201ENSMUST00000118892 745 ntBASIC27.12■■□□□ 1.93
Usp47Q8BY87 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
Usp47Q8BY87 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp47Q8BY87 Golph3-202ENSMUST00000226517 2359 ntBASIC27.12■■□□□ 1.93
Usp47Q8BY87 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Usp47Q8BY87 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp47Q8BY87 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp47Q8BY87 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp47Q8BY87 AC131586.2-201ENSMUST00000228370 1512 ntBASIC27.11■■□□□ 1.93
Usp47Q8BY87 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp47Q8BY87 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC27.1■■□□□ 1.93
Usp47Q8BY87 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
Usp47Q8BY87 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Usp47Q8BY87 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms