Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.41■□□□□ 0.54
Ptchd3Q0EEE2 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ptchd3Q0EEE2 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ptchd3Q0EEE2 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ptchd3Q0EEE2 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ptchd3Q0EEE2 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.39■□□□□ 0.54
Ptchd3Q0EEE2 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.39■□□□□ 0.54
Ptchd3Q0EEE2 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
Ptchd3Q0EEE2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ptchd3Q0EEE2 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ptchd3Q0EEE2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ptchd3Q0EEE2 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ptchd3Q0EEE2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ptchd3Q0EEE2 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 BC021767-201ENSMUST00000126387 1716 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms