Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.99■□□□□ 0.63
Shox2P70390 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.99■□□□□ 0.63
Shox2P70390 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Shox2P70390 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Shox2P70390 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Shox2P70390 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Shox2P70390 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.98■□□□□ 0.63
Shox2P70390 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Shox2P70390 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.98■□□□□ 0.63
Shox2P70390 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Shox2P70390 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Shox2P70390 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.97■□□□□ 0.63
Shox2P70390 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Shox2P70390 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shox2P70390 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.96■□□□□ 0.63
Shox2P70390 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.96■□□□□ 0.63
Shox2P70390 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.96■□□□□ 0.63
Shox2P70390 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shox2P70390 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.95■□□□□ 0.62
Shox2P70390 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.95■□□□□ 0.62
Shox2P70390 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shox2P70390 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.94■□□□□ 0.62
Shox2P70390 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Shox2P70390 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
Shox2P70390 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Shox2P70390 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shox2P70390 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Shox2P70390 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Shox2P70390 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Shox2P70390 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shox2P70390 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.92■□□□□ 0.62
Shox2P70390 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Shox2P70390 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shox2P70390 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.91■□□□□ 0.62
Shox2P70390 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Gm43530-201ENSMUST00000195920 274 ntBASIC18.91■□□□□ 0.62
Shox2P70390 Gm10399-202ENSMUST00000202768 748 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms