Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn2aA0A0J9YTW6 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn2aA0A0J9YTW6 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn2aA0A0J9YTW6 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn2aA0A0J9YTW6 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Gm37179-201ENSMUST00000194862 823 ntBASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Gm7291-201ENSMUST00000199147 382 ntBASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.59■□□□□ 0.41
Scn2aA0A0J9YTW6 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn2aA0A0J9YTW6 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm13146-201ENSMUST00000118508 780 ntBASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm42569-201ENSMUST00000200539 472 ntBASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn2aA0A0J9YTW6 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn2aA0A0J9YTW6 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn2aA0A0J9YTW6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm18671-201ENSMUST00000214826 683 ntBASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Scn2aA0A0J9YTW6 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm38205-201ENSMUST00000192243 258 ntBASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn2aA0A0J9YTW6 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms