Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Gm6365-201ENSMUST00000054711 744 ntBASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim54Q9ERP3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim54Q9ERP3 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Gm13534-201ENSMUST00000121169 513 ntBASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim54Q9ERP3 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Trim54Q9ERP3 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Trim54Q9ERP3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim54Q9ERP3 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim54Q9ERP3 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Gm13148-201ENSMUST00000118892 745 ntBASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Gm4968-201ENSMUST00000071458 858 ntBASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.75■□□□□ 0.91
Trim54Q9ERP3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim54Q9ERP3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim54Q9ERP3 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim54Q9ERP3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Gm7860-201ENSMUST00000121190 879 ntBASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim54Q9ERP3 Gm7290-201ENSMUST00000104990 617 ntBASIC20.7■□□□□ 0.9
Trim54Q9ERP3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim54Q9ERP3 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim54Q9ERP3 Gm12918-201ENSMUST00000120234 636 ntBASIC20.7■□□□□ 0.9
Trim54Q9ERP3 Gm15710-201ENSMUST00000121821 636 ntBASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms