Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Smad6-203ENSMUST00000179458 273 ntBASIC22.58■■□□□ 1.21
Limch1Q3UH68 AC099934.2-201ENSMUST00000196389 70 ntBASIC22.58■■□□□ 1.21
Limch1Q3UH68 AC156953.1-201ENSMUST00000196953 70 ntBASIC22.58■■□□□ 1.21
Limch1Q3UH68 AC157822.2-201ENSMUST00000200291 70 ntBASIC22.58■■□□□ 1.21
Limch1Q3UH68 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Limch1Q3UH68 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Limch1Q3UH68 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Limch1Q3UH68 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Limch1Q3UH68 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Limch1Q3UH68 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Limch1Q3UH68 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Gm42642-201ENSMUST00000200683 355 ntBASIC22.57■■□□□ 1.2
Limch1Q3UH68 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Limch1Q3UH68 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Limch1Q3UH68 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Limch1Q3UH68 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Limch1Q3UH68 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC22.56■■□□□ 1.2
Limch1Q3UH68 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC22.56■■□□□ 1.2
Limch1Q3UH68 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Limch1Q3UH68 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC22.55■■□□□ 1.2
Limch1Q3UH68 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Gm10849-201ENSMUST00000100397 618 ntBASIC22.55■■□□□ 1.2
Limch1Q3UH68 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Limch1Q3UH68 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Limch1Q3UH68 Gm10129-202ENSMUST00000193100 1316 ntBASIC22.55■■□□□ 1.2
Limch1Q3UH68 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Limch1Q3UH68 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Limch1Q3UH68 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Limch1Q3UH68 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC22.53■■□□□ 1.2
Limch1Q3UH68 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC22.53■■□□□ 1.2
Limch1Q3UH68 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Limch1Q3UH68 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Limch1Q3UH68 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Limch1Q3UH68 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Limch1Q3UH68 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Limch1Q3UH68 Gm42911-201ENSMUST00000199360 1630 ntBASIC22.52■■□□□ 1.2
Limch1Q3UH68 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
Limch1Q3UH68 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Gm45640-201ENSMUST00000210665 1896 ntBASIC22.51■■□□□ 1.19
Limch1Q3UH68 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC22.51■■□□□ 1.19
Limch1Q3UH68 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Limch1Q3UH68 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Limch1Q3UH68 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Limch1Q3UH68 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Spcs1-207ENSMUST00000228767 1008 ntBASIC22.5■■□□□ 1.19
Limch1Q3UH68 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
Limch1Q3UH68 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Limch1Q3UH68 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Limch1Q3UH68 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Limch1Q3UH68 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms