Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Lig3P97386 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Lig3P97386 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lig3P97386 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lig3P97386 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lig3P97386 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.77■□□□□ 0.92
Lig3P97386 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.77■□□□□ 0.92
Lig3P97386 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.77■□□□□ 0.92
Lig3P97386 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.77■□□□□ 0.92
Lig3P97386 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.77■□□□□ 0.92
Lig3P97386 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Lig3P97386 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
Lig3P97386 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lig3P97386 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lig3P97386 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Lig3P97386 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Lig3P97386 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.77■□□□□ 0.91
Lig3P97386 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Lig3P97386 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.76■□□□□ 0.91
Lig3P97386 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.76■□□□□ 0.91
Lig3P97386 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 Gm12441-201ENSMUST00000121806 588 ntBASIC20.76■□□□□ 0.91
Lig3P97386 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
Lig3P97386 Gm10653-202ENSMUST00000139570 835 ntBASIC20.76■□□□□ 0.91
Lig3P97386 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.76■□□□□ 0.91
Lig3P97386 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.76■□□□□ 0.91
Lig3P97386 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lig3P97386 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Lig3P97386 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.75■□□□□ 0.91
Lig3P97386 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Lig3P97386 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Lig3P97386 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Lig3P97386 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lig3P97386 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.74■□□□□ 0.91
Lig3P97386 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lig3P97386 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lig3P97386 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lig3P97386 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.74■□□□□ 0.91
Lig3P97386 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.74■□□□□ 0.91
Lig3P97386 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.74■□□□□ 0.91
Lig3P97386 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.74■□□□□ 0.91
Lig3P97386 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lig3P97386 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lig3P97386 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Lig3P97386 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.73■□□□□ 0.91
Lig3P97386 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Gm9988-201ENSMUST00000069786 435 ntBASIC20.73■□□□□ 0.91
Lig3P97386 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.73■□□□□ 0.91
Lig3P97386 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.73■□□□□ 0.91
Lig3P97386 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lig3P97386 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Lig3P97386 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Lig3P97386 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.72■□□□□ 0.91
Lig3P97386 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lig3P97386 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Lig3P97386 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
Lig3P97386 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Lig3P97386 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lig3P97386 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms