Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.19■□□□□ 0.5
Msx1P13297 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.19■□□□□ 0.5
Msx1P13297 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msx1P13297 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msx1P13297 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.18■□□□□ 0.5
Msx1P13297 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Msx1P13297 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msx1P13297 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msx1P13297 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msx1P13297 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msx1P13297 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.17■□□□□ 0.5
Msx1P13297 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.17■□□□□ 0.5
Msx1P13297 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msx1P13297 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msx1P13297 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msx1P13297 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.16■□□□□ 0.5
Msx1P13297 Nespas-201ENSMUST00000143738 1083 ntBASIC18.16■□□□□ 0.5
Msx1P13297 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.16■□□□□ 0.5
Msx1P13297 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msx1P13297 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msx1P13297 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Gm13234-201ENSMUST00000120010 747 ntBASIC18.15■□□□□ 0.5
Msx1P13297 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.15■□□□□ 0.5
Msx1P13297 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.15■□□□□ 0.5
Msx1P13297 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Msx1P13297 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msx1P13297 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Msx1P13297 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.14■□□□□ 0.49
Msx1P13297 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Msx1P13297 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.14■□□□□ 0.49
Msx1P13297 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Msx1P13297 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msx1P13297 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.13■□□□□ 0.49
Msx1P13297 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.13■□□□□ 0.49
Msx1P13297 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.13■□□□□ 0.49
Msx1P13297 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.13■□□□□ 0.49
Msx1P13297 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msx1P13297 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.13■□□□□ 0.49
Msx1P13297 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Msx1P13297 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msx1P13297 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msx1P13297 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msx1P13297 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msx1P13297 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Msx1P13297 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msx1P13297 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msx1P13297 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Msx1P13297 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.11■□□□□ 0.49
Msx1P13297 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.11■□□□□ 0.49
Msx1P13297 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Msx1P13297 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms