Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1i3O35627 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.66■□□□□ 0.9
Nr1i3O35627 Gm43137-201ENSMUST00000198052 594 ntBASIC20.66■□□□□ 0.9
Nr1i3O35627 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1i3O35627 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.65■□□□□ 0.9
Nr1i3O35627 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Nr1i3O35627 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Nr1i3O35627 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.65■□□□□ 0.9
Nr1i3O35627 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1i3O35627 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Nr1i3O35627 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Nr1i3O35627 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.64■□□□□ 0.9
Nr1i3O35627 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nr1i3O35627 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nr1i3O35627 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.64■□□□□ 0.89
Nr1i3O35627 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1i3O35627 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Nr1i3O35627 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Nr1i3O35627 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Nr1i3O35627 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.63■□□□□ 0.89
Nr1i3O35627 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Nr1i3O35627 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1i3O35627 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.62■□□□□ 0.89
Nr1i3O35627 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1i3O35627 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Nr1i3O35627 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.61■□□□□ 0.89
Nr1i3O35627 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Nr1i3O35627 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1i3O35627 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Nr1i3O35627 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Gm12251-201ENSMUST00000117893 792 ntBASIC20.6■□□□□ 0.89
Nr1i3O35627 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.6■□□□□ 0.89
Nr1i3O35627 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.6■□□□□ 0.89
Nr1i3O35627 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1i3O35627 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Nr1i3O35627 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nr1i3O35627 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.59■□□□□ 0.89
Nr1i3O35627 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.59■□□□□ 0.89
Nr1i3O35627 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms