Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Chd3B1AR17 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Chd3B1AR17 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Chd3B1AR17 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Chd3B1AR17 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Chd3B1AR17 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Chd3B1AR17 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Chd3B1AR17 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Chd3B1AR17 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.88■□□□□ 0.61
Chd3B1AR17 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.88■□□□□ 0.61
Chd3B1AR17 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Chd3B1AR17 Gm6365-201ENSMUST00000054711 744 ntBASIC18.88■□□□□ 0.61
Chd3B1AR17 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Chd3B1AR17 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Chd3B1AR17 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Chd3B1AR17 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Chd3B1AR17 Gm7860-201ENSMUST00000121190 879 ntBASIC18.87■□□□□ 0.61
Chd3B1AR17 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Chd3B1AR17 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Chd3B1AR17 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Chd3B1AR17 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Chd3B1AR17 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Chd3B1AR17 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Chd3B1AR17 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Chd3B1AR17 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Chd3B1AR17 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.86■□□□□ 0.61
Chd3B1AR17 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.86■□□□□ 0.61
Chd3B1AR17 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Chd3B1AR17 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.85■□□□□ 0.61
Chd3B1AR17 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Nespas-201ENSMUST00000143738 1083 ntBASIC18.85■□□□□ 0.61
Chd3B1AR17 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Chd3B1AR17 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Chd3B1AR17 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Chd3B1AR17 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd3B1AR17 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.83■□□□□ 0.61
Chd3B1AR17 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC18.83■□□□□ 0.61
Chd3B1AR17 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chd3B1AR17 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chd3B1AR17 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Chd3B1AR17 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chd3B1AR17 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chd3B1AR17 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Chd3B1AR17 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chd3B1AR17 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Chd3B1AR17 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd3B1AR17 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm7290-201ENSMUST00000104990 617 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm12918-201ENSMUST00000120234 636 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm15710-201ENSMUST00000121821 636 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm5075-201ENSMUST00000196916 622 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms