Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC23.22■■□□□ 1.31
Scn11aQ9R053 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC23.21■■□□□ 1.31
Scn11aQ9R053 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Gm20100-201ENSMUST00000209418 2272 ntBASIC23.21■■□□□ 1.31
Scn11aQ9R053 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Scn11aQ9R053 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Gm29241-201ENSMUST00000189260 1096 ntBASIC23.21■■□□□ 1.31
Scn11aQ9R053 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn11aQ9R053 Gm27032-201ENSMUST00000183124 1116 ntBASIC23.2■■□□□ 1.3
Scn11aQ9R053 Gm32699-201ENSMUST00000221728 1988 ntBASIC23.2■■□□□ 1.3
Scn11aQ9R053 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Scn11aQ9R053 Gm13168-201ENSMUST00000121771 632 ntBASIC23.19■■□□□ 1.3
Scn11aQ9R053 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn11aQ9R053 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn11aQ9R053 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn11aQ9R053 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn11aQ9R053 AC122769.4-201ENSMUST00000228166 901 ntBASIC23.18■■□□□ 1.3
Scn11aQ9R053 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn11aQ9R053 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC23.17■■□□□ 1.3
Scn11aQ9R053 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn11aQ9R053 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn11aQ9R053 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Scn11aQ9R053 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn11aQ9R053 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC23.17■■□□□ 1.3
Scn11aQ9R053 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC23.17■■□□□ 1.3
Scn11aQ9R053 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Gm7290-201ENSMUST00000104990 617 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 Gm12918-201ENSMUST00000120234 636 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 Gm15710-201ENSMUST00000121821 636 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 Gm5075-201ENSMUST00000196916 622 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC23.16■■□□□ 1.3
Scn11aQ9R053 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn11aQ9R053 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn11aQ9R053 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn11aQ9R053 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn11aQ9R053 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Scn11aQ9R053 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Scn11aQ9R053 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
Scn11aQ9R053 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Hsf1-207ENSMUST00000228371 2102 ntBASIC23.13■■□□□ 1.29
Scn11aQ9R053 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn11aQ9R053 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn11aQ9R053 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Scn11aQ9R053 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn11aQ9R053 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Scn11aQ9R053 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Scn11aQ9R053 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms