Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc40Q8BI79 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc40Q8BI79 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Gm21956-201ENSMUST00000179946 522 ntBASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Ccdc40Q8BI79 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc40Q8BI79 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc40Q8BI79 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc40Q8BI79 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Ccdc40Q8BI79 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc40Q8BI79 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Gm43137-201ENSMUST00000198052 594 ntBASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 AA386476-201ENSMUST00000098781 1665 ntBASIC19.94■□□□□ 0.78
Ccdc40Q8BI79 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Ccdc40Q8BI79 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Grk6-206ENSMUST00000224995 2971 ntBASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc40Q8BI79 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Spcs1-204ENSMUST00000226782 949 ntBASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc40Q8BI79 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms