Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Ubfd1Q78JW9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ubfd1Q78JW9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ubfd1Q78JW9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubfd1Q78JW9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Gm12933-201ENSMUST00000120203 872 ntBASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.81■□□□□ 0.6
Ubfd1Q78JW9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ubfd1Q78JW9 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ubfd1Q78JW9 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ubfd1Q78JW9 Gm7860-201ENSMUST00000121190 879 ntBASIC18.77■□□□□ 0.6
Ubfd1Q78JW9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ubfd1Q78JW9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ubfd1Q78JW9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ubfd1Q78JW9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ubfd1Q78JW9 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Gm10602-201ENSMUST00000098239 609 ntBASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ubfd1Q78JW9 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Gm13534-201ENSMUST00000121169 513 ntBASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ubfd1Q78JW9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms