Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Rtl3Q6P1Y1 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rtl3Q6P1Y1 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rtl3Q6P1Y1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rtl3Q6P1Y1 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Rtl3Q6P1Y1 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Rtl3Q6P1Y1 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Rtl3Q6P1Y1 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rtl3Q6P1Y1 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Gm37179-201ENSMUST00000194862 823 ntBASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rtl3Q6P1Y1 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
Rtl3Q6P1Y1 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms