Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3aQ3ULJ3 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Upf3aQ3ULJ3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3aQ3ULJ3 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3aQ3ULJ3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3aQ3ULJ3 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3aQ3ULJ3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3aQ3ULJ3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Upf3aQ3ULJ3 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3aQ3ULJ3 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 Gm26524-201ENSMUST00000192339 390 ntBASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.33■□□□□ 0.85
Upf3aQ3ULJ3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3aQ3ULJ3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Gm37856-201ENSMUST00000191634 999 ntBASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms