Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf3Q9QXK7 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cpsf3Q9QXK7 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cpsf3Q9QXK7 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Cpsf3Q9QXK7 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cpsf3Q9QXK7 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Cpsf3Q9QXK7 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Cpsf3Q9QXK7 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
Cpsf3Q9QXK7 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf3Q9QXK7 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cpsf3Q9QXK7 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.85■□□□□ 0.93
Cpsf3Q9QXK7 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cpsf3Q9QXK7 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cpsf3Q9QXK7 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.85■□□□□ 0.93
Cpsf3Q9QXK7 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cpsf3Q9QXK7 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Cpsf3Q9QXK7 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cpsf3Q9QXK7 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cpsf3Q9QXK7 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cpsf3Q9QXK7 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Gm9988-201ENSMUST00000069786 435 ntBASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cpsf3Q9QXK7 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cpsf3Q9QXK7 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cpsf3Q9QXK7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cpsf3Q9QXK7 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.8■□□□□ 0.92
Cpsf3Q9QXK7 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.8■□□□□ 0.92
Cpsf3Q9QXK7 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Gm42642-201ENSMUST00000200683 355 ntBASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cpsf3Q9QXK7 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms