Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.46■□□□□ 0.23
Col7a1Q63870 Gm33142-201ENSMUST00000193913 867 ntBASIC16.46■□□□□ 0.23
Col7a1Q63870 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col7a1Q63870 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
Col7a1Q63870 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col7a1Q63870 Gm18666-201ENSMUST00000190039 958 ntBASIC16.46■□□□□ 0.22
Col7a1Q63870 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Col7a1Q63870 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col7a1Q63870 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
Col7a1Q63870 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Col7a1Q63870 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.45■□□□□ 0.22
Col7a1Q63870 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col7a1Q63870 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.45■□□□□ 0.22
Col7a1Q63870 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col7a1Q63870 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.44■□□□□ 0.22
Col7a1Q63870 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Col7a1Q63870 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col7a1Q63870 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Col7a1Q63870 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Col7a1Q63870 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.43■□□□□ 0.22
Col7a1Q63870 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col7a1Q63870 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col7a1Q63870 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col7a1Q63870 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col7a1Q63870 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col7a1Q63870 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col7a1Q63870 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col7a1Q63870 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col7a1Q63870 Gm42418-201ENSMUST00000182010 1831 ntBASIC16.42■□□□□ 0.22
Col7a1Q63870 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col7a1Q63870 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col7a1Q63870 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col7a1Q63870 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Col7a1Q63870 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col7a1Q63870 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.41■□□□□ 0.22
Col7a1Q63870 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.41■□□□□ 0.22
Col7a1Q63870 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col7a1Q63870 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col7a1Q63870 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col7a1Q63870 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Gm2399-201ENSMUST00000104944 225 ntBASIC16.4■□□□□ 0.22
Col7a1Q63870 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Col7a1Q63870 Gm13559-201ENSMUST00000120476 863 ntBASIC16.4■□□□□ 0.22
Col7a1Q63870 Mir6236-201ENSMUST00000184437 123 ntBASIC16.4■□□□□ 0.22
Col7a1Q63870 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.4■□□□□ 0.22
Col7a1Q63870 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Col7a1Q63870 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col7a1Q63870 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
Col7a1Q63870 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.4■□□□□ 0.22
Col7a1Q63870 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col7a1Q63870 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Col7a1Q63870 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col7a1Q63870 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Col7a1Q63870 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col7a1Q63870 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col7a1Q63870 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col7a1Q63870 AC164883.3-201ENSMUST00000227396 1774 ntBASIC16.39■□□□□ 0.21
Col7a1Q63870 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col7a1Q63870 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC16.38■□□□□ 0.21
Col7a1Q63870 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.38■□□□□ 0.21
Col7a1Q63870 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.38■□□□□ 0.21
Col7a1Q63870 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Col7a1Q63870 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col7a1Q63870 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Col7a1Q63870 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Gm44771-201ENSMUST00000206975 626 ntBASIC16.37■□□□□ 0.21
Col7a1Q63870 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.37■□□□□ 0.21
Col7a1Q63870 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms