Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC32■■■□□ 2.71
Ccdc88bQ4QRL3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
Ccdc88bQ4QRL3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC31.98■■■□□ 2.71
Ccdc88bQ4QRL3 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Ccdc88bQ4QRL3 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Ccdc88bQ4QRL3 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 Gm12441-201ENSMUST00000121806 588 ntBASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Ccdc88bQ4QRL3 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Ccdc88bQ4QRL3 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
Ccdc88bQ4QRL3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC31.96■■■□□ 2.71
Ccdc88bQ4QRL3 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC31.96■■■□□ 2.71
Ccdc88bQ4QRL3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Ccdc88bQ4QRL3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Ccdc88bQ4QRL3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC31.95■■■□□ 2.7
Ccdc88bQ4QRL3 Gm12527-201ENSMUST00000117967 564 ntBASIC31.94■■■□□ 2.7
Ccdc88bQ4QRL3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ccdc88bQ4QRL3 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ccdc88bQ4QRL3 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ccdc88bQ4QRL3 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Ccdc88bQ4QRL3 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Ccdc88bQ4QRL3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC31.93■■■□□ 2.7
Ccdc88bQ4QRL3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Ccdc88bQ4QRL3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Ccdc88bQ4QRL3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC31.92■■■□□ 2.7
Ccdc88bQ4QRL3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Gm6211-202ENSMUST00000167849 925 ntBASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
Ccdc88bQ4QRL3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Ccdc88bQ4QRL3 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Ccdc88bQ4QRL3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Ccdc88bQ4QRL3 Gm32699-201ENSMUST00000221728 1988 ntBASIC31.89■■■□□ 2.69
Ccdc88bQ4QRL3 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Ccdc88bQ4QRL3 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Gm26524-201ENSMUST00000192339 390 ntBASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Gm43006-201ENSMUST00000197702 1602 ntBASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Ccdc88bQ4QRL3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Ccdc88bQ4QRL3 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Ccdc88bQ4QRL3 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC31.86■■■□□ 2.69
Ccdc88bQ4QRL3 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC31.86■■■□□ 2.69
Ccdc88bQ4QRL3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Ccdc88bQ4QRL3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Ccdc88bQ4QRL3 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Ccdc88bQ4QRL3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC31.85■■■□□ 2.69
Ccdc88bQ4QRL3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
Ccdc88bQ4QRL3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Ccdc88bQ4QRL3 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms