Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lig4Q8BTF7 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lig4Q8BTF7 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lig4Q8BTF7 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Gm9988-201ENSMUST00000069786 435 ntBASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lig4Q8BTF7 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Lig4Q8BTF7 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Lig4Q8BTF7 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Lig4Q8BTF7 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lig4Q8BTF7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lig4Q8BTF7 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Lig4Q8BTF7 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Gm42778-201ENSMUST00000199644 553 ntBASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Gm42642-201ENSMUST00000200683 355 ntBASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lig4Q8BTF7 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lig4Q8BTF7 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms