Protein–RNA interactions for Protein: Q61466

Smarcd1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, mousemouse

Known RBP Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd1Q61466 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcd1Q61466 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcd1Q61466 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.35■□□□□ 0.85
Smarcd1Q61466 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcd1Q61466 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Smarcd1Q61466 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcd1Q61466 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Smarcd1Q61466 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Smarcd1Q61466 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smarcd1Q61466 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Smarcd1Q61466 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Smarcd1Q61466 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smarcd1Q61466 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Smarcd1Q61466 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.32■□□□□ 0.84
Smarcd1Q61466 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Smarcd1Q61466 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smarcd1Q61466 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarcd1Q61466 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarcd1Q61466 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smarcd1Q61466 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smarcd1Q61466 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Gm9988-201ENSMUST00000069786 435 ntBASIC20.31■□□□□ 0.84
Smarcd1Q61466 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarcd1Q61466 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Gm42642-201ENSMUST00000200683 355 ntBASIC20.3■□□□□ 0.84
Smarcd1Q61466 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarcd1Q61466 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarcd1Q61466 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Gm42778-201ENSMUST00000199644 553 ntBASIC20.28■□□□□ 0.84
Smarcd1Q61466 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarcd1Q61466 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Smarcd1Q61466 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarcd1Q61466 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.27■□□□□ 0.84
Smarcd1Q61466 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
Smarcd1Q61466 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms