Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Lig3P97386 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lig3P97386 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Lig3P97386 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lig3P97386 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lig3P97386 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lig3P97386 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Lig3P97386 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.03■□□□□ 0.96
Lig3P97386 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.03■□□□□ 0.96
Lig3P97386 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Lig3P97386 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Lig3P97386 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.02■□□□□ 0.96
Lig3P97386 Gm42778-201ENSMUST00000199644 553 ntBASIC21.02■□□□□ 0.96
Lig3P97386 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.02■□□□□ 0.96
Lig3P97386 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig3P97386 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.01■□□□□ 0.95
Lig3P97386 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Lig3P97386 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.01■□□□□ 0.95
Lig3P97386 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.01■□□□□ 0.95
Lig3P97386 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig3P97386 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Gm5913-201ENSMUST00000119397 1399 ntBASIC21■□□□□ 0.95
Lig3P97386 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21■□□□□ 0.95
Lig3P97386 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Lig3P97386 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Gm12933-201ENSMUST00000120203 872 ntBASIC20.99■□□□□ 0.95
Lig3P97386 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Gm43530-201ENSMUST00000195920 274 ntBASIC20.99■□□□□ 0.95
Lig3P97386 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Lig3P97386 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.99■□□□□ 0.95
Lig3P97386 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Lig3P97386 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig3P97386 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig3P97386 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig3P97386 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig3P97386 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Lig3P97386 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.98■□□□□ 0.95
Lig3P97386 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.98■□□□□ 0.95
Lig3P97386 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Lig3P97386 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.98■□□□□ 0.95
Lig3P97386 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
Lig3P97386 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
Lig3P97386 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig3P97386 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.96■□□□□ 0.95
Lig3P97386 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Lig3P97386 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig3P97386 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Lig3P97386 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Lig3P97386 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.95■□□□□ 0.94
Lig3P97386 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms