Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shmt1P50431 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.65■□□□□ 0.9
Shmt1P50431 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Shmt1P50431 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
Shmt1P50431 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.65■□□□□ 0.9
Shmt1P50431 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shmt1P50431 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Shmt1P50431 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Shmt1P50431 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
Shmt1P50431 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shmt1P50431 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.64■□□□□ 0.9
Shmt1P50431 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.64■□□□□ 0.89
Shmt1P50431 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Shmt1P50431 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Shmt1P50431 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Shmt1P50431 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shmt1P50431 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Shmt1P50431 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Gm10493-201ENSMUST00000097270 612 ntBASIC20.63■□□□□ 0.89
Shmt1P50431 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shmt1P50431 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Shmt1P50431 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Shmt1P50431 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Gm27801-201ENSMUST00000184174 223 ntBASIC20.62■□□□□ 0.89
Shmt1P50431 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.62■□□□□ 0.89
Shmt1P50431 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.62■□□□□ 0.89
Shmt1P50431 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Shmt1P50431 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.62■□□□□ 0.89
Shmt1P50431 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.62■□□□□ 0.89
Shmt1P50431 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shmt1P50431 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shmt1P50431 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shmt1P50431 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.61■□□□□ 0.89
Shmt1P50431 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Shmt1P50431 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.61■□□□□ 0.89
Shmt1P50431 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shmt1P50431 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.6■□□□□ 0.89
Shmt1P50431 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.6■□□□□ 0.89
Shmt1P50431 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shmt1P50431 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.59■□□□□ 0.89
Shmt1P50431 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Shmt1P50431 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Shmt1P50431 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shmt1P50431 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shmt1P50431 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Shmt1P50431 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.58■□□□□ 0.89
Shmt1P50431 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.58■□□□□ 0.89
Shmt1P50431 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.58■□□□□ 0.89
Shmt1P50431 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.58■□□□□ 0.89
Shmt1P50431 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Shmt1P50431 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shmt1P50431 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Shmt1P50431 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shmt1P50431 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.57■□□□□ 0.88
Shmt1P50431 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shmt1P50431 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Shmt1P50431 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.56■□□□□ 0.88
Shmt1P50431 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shmt1P50431 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.56■□□□□ 0.88
Shmt1P50431 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Shmt1P50431 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Shmt1P50431 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms