Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RaraP11416 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RaraP11416 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RaraP11416 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.03■□□□□ 0.96
RaraP11416 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.03■□□□□ 0.96
RaraP11416 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RaraP11416 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RaraP11416 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.03■□□□□ 0.96
RaraP11416 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.03■□□□□ 0.96
RaraP11416 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RaraP11416 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RaraP11416 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RaraP11416 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.03■□□□□ 0.96
RaraP11416 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RaraP11416 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RaraP11416 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RaraP11416 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RaraP11416 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RaraP11416 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RaraP11416 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RaraP11416 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RaraP11416 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RaraP11416 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RaraP11416 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.01■□□□□ 0.95
RaraP11416 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.01■□□□□ 0.95
RaraP11416 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RaraP11416 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
RaraP11416 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RaraP11416 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RaraP11416 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21■□□□□ 0.95
RaraP11416 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21■□□□□ 0.95
RaraP11416 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21■□□□□ 0.95
RaraP11416 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
RaraP11416 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RaraP11416 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.99■□□□□ 0.95
RaraP11416 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.99■□□□□ 0.95
RaraP11416 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
RaraP11416 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RaraP11416 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
RaraP11416 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RaraP11416 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.98■□□□□ 0.95
RaraP11416 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.98■□□□□ 0.95
RaraP11416 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.98■□□□□ 0.95
RaraP11416 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
RaraP11416 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.98■□□□□ 0.95
RaraP11416 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.98■□□□□ 0.95
RaraP11416 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RaraP11416 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RaraP11416 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Golgb1-201ENSMUST00000023534 498 ntBASIC20.97■□□□□ 0.95
RaraP11416 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
RaraP11416 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RaraP11416 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RaraP11416 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RaraP11416 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RaraP11416 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.96■□□□□ 0.95
RaraP11416 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RaraP11416 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RaraP11416 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RaraP11416 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.95■□□□□ 0.94
RaraP11416 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RaraP11416 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RaraP11416 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RaraP11416 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RaraP11416 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms