Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chmp6P0C0A3 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Chmp6P0C0A3 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Chmp6P0C0A3 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chmp6P0C0A3 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chmp6P0C0A3 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chmp6P0C0A3 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Gm43173-201ENSMUST00000202246 593 ntBASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Serp2-204ENSMUST00000228055 705 ntBASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chmp6P0C0A3 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chmp6P0C0A3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Chmp6P0C0A3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Chmp6P0C0A3 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms