Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Gm29257-201ENSMUST00000186115 639 ntBASIC17.62■□□□□ 0.41
Lmx1bO88609 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Lmx1bO88609 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lmx1bO88609 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.61■□□□□ 0.41
Lmx1bO88609 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Lmx1bO88609 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Lmx1bO88609 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lmx1bO88609 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Lmx1bO88609 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lmx1bO88609 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lmx1bO88609 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lmx1bO88609 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Gm7291-201ENSMUST00000199147 382 ntBASIC17.6■□□□□ 0.41
Lmx1bO88609 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Lmx1bO88609 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lmx1bO88609 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lmx1bO88609 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Lmx1bO88609 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
Lmx1bO88609 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Iqck-206ENSMUST00000208658 2891 ntBASIC17.59■□□□□ 0.41
Lmx1bO88609 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Lmx1bO88609 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.59■□□□□ 0.41
Lmx1bO88609 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.59■□□□□ 0.41
Lmx1bO88609 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Lmx1bO88609 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.59■□□□□ 0.41
Lmx1bO88609 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lmx1bO88609 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lmx1bO88609 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Lmx1bO88609 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lmx1bO88609 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lmx1bO88609 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Lmx1bO88609 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lmx1bO88609 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lmx1bO88609 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lmx1bO88609 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Lmx1bO88609 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Lmx1bO88609 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Lmx1bO88609 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lmx1bO88609 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.56■□□□□ 0.4
Lmx1bO88609 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.56■□□□□ 0.4
Lmx1bO88609 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Lmx1bO88609 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lmx1bO88609 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lmx1bO88609 Gm10849-201ENSMUST00000100397 618 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms