Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Tnfsf18-201ENSMUST00000086084 2066 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Nod2-202ENSMUST00000109634 4666 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Aldoc-201ENSMUST00000017534 2786 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm6158-201ENSMUST00000109467 904 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm14654-201ENSMUST00000118620 447 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm13397-201ENSMUST00000119562 878 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Vmn1r-ps114-201ENSMUST00000121050 1040 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 4930538E20Rik-201ENSMUST00000131383 546 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm23820-201ENSMUST00000158450 300 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm25830-201ENSMUST00000158923 132 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm9621-201ENSMUST00000183322 1003 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Mir7076-201ENSMUST00000183519 74 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Mir8111-201ENSMUST00000184463 137 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm7539-201ENSMUST00000189789 630 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm17815-201ENSMUST00000198305 895 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 AC157931.1-201ENSMUST00000198565 346 ntAPPRIS P1 TSL 3 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm45047-201ENSMUST00000207651 309 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm45745-201ENSMUST00000211447 1180 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm18035-201ENSMUST00000211962 589 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC7.87□□□□□ -1.15
Hmgb3O54879 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 AC154585.1-201ENSMUST00000218917 997 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC7.87□□□□□ -1.15
Hmgb3O54879 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 CT009536.2-201ENSMUST00000225370 665 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 3110009E18Rik-201ENSMUST00000027637 1007 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Otoa-201ENSMUST00000047025 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Palb2-202ENSMUST00000098068 3750 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Ces2c-201ENSMUST00000055052 1970 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Cdhr2-201ENSMUST00000037145 4129 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gdpd1-201ENSMUST00000020804 2336 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 B930095G15Rik-201ENSMUST00000130256 4715 ntTSL 2 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Plekho2-201ENSMUST00000068944 3273 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Vmn1r41-206ENSMUST00000228068 1536 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Wee2-201ENSMUST00000038907 2884 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Fabp12-201ENSMUST00000029043 2512 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Ints10-202ENSMUST00000070713 4192 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Agxt2-201ENSMUST00000022858 1825 ntTSL 2 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Adam17-202ENSMUST00000101551 4469 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Slc2a9-202ENSMUST00000067872 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Tcf7l2-208ENSMUST00000111654 3059 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Gm44914-201ENSMUST00000207191 2720 ntBASIC7.87□□□□□ -1.15
Hmgb3O54879 Tectb-201ENSMUST00000025936 2725 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Hmgb3O54879 Phactr1-214ENSMUST00000149235 2076 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
Hmgb3O54879 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Adarb2-201ENSMUST00000064473 6721 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Ehbp1-201ENSMUST00000045167 4821 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Olfr169-204ENSMUST00000216070 2328 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Zfp169-207ENSMUST00000177530 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm43081-201ENSMUST00000199082 1380 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 A330044P14Rik-202ENSMUST00000203311 1683 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm26700-201ENSMUST00000181480 1957 ntTSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Apol11b-202ENSMUST00000180949 2261 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Txk-206ENSMUST00000198464 2271 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm31983-202ENSMUST00000210553 3155 ntTSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Kpna3-201ENSMUST00000022496 4069 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm44437-201ENSMUST00000203832 4038 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm38336-201ENSMUST00000193040 2549 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Glb1l2-205ENSMUST00000162252 2209 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 M1ap-201ENSMUST00000113980 1945 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm13384-201ENSMUST00000117166 1344 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Pcdhb8-201ENSMUST00000051163 3334 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Trcg1-201ENSMUST00000093837 2701 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 CT009518.1-201ENSMUST00000224886 1571 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Adamdec1-201ENSMUST00000022641 2442 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm13937-201ENSMUST00000121000 988 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm11675-201ENSMUST00000121873 832 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gstm1-202ENSMUST00000126593 828 ntTSL 3 BASIC7.86□□□□□ -1.15
Hmgb3O54879 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 AC238811.4-201ENSMUST00000178019 1246 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 AC238940.3-201ENSMUST00000178830 1246 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm9211-201ENSMUST00000182882 975 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm28671-201ENSMUST00000187036 692 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 4931431B13Rik-202ENSMUST00000205646 473 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 4933400L20Rik-202ENSMUST00000211119 870 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm3791-201ENSMUST00000220790 768 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 AC134601.2-201ENSMUST00000221071 130 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm18968-201ENSMUST00000221319 862 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Gm7868-201ENSMUST00000223510 680 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 CT030195.2-201ENSMUST00000226074 1286 ntBASIC7.86□□□□□ -1.15
Hmgb3O54879 Cd1d2-201ENSMUST00000041920 1243 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
Hmgb3O54879 Oprl1-201ENSMUST00000071585 2999 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
Hmgb3O54879 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC7.86□□□□□ -1.15
Retrieved 100 of 76,532 protein–RNA pairs in 89.6 ms