Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rsrc2-208ENSMUST00000182309 1595 ntTSL 5 BASIC8□□□□□ -1.13
Hmgb3O54879 Blnk-202ENSMUST00000117695 1701 ntTSL 1 (best) BASIC8□□□□□ -1.13
Hmgb3O54879 Gm45728-201ENSMUST00000211475 2979 ntBASIC8□□□□□ -1.13
Hmgb3O54879 Gm26511-201ENSMUST00000181400 1895 ntTSL 1 (best) BASIC8□□□□□ -1.13
Hmgb3O54879 Cyp2b9-201ENSMUST00000082214 1876 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
Hmgb3O54879 Trim36-201ENSMUST00000037011 4544 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
Hmgb3O54879 Serbp1-201ENSMUST00000042990 15474 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
Hmgb3O54879 Gm43289-201ENSMUST00000200537 1475 ntBASIC8□□□□□ -1.13
Hmgb3O54879 AC113441.2-201ENSMUST00000221538 1468 ntBASIC8□□□□□ -1.13
Hmgb3O54879 Auts2-217ENSMUST00000187544 3166 ntTSL 5 BASIC8□□□□□ -1.13
Hmgb3O54879 Rtp3-203ENSMUST00000199891 2463 ntAPPRIS P1 TSL 5 BASIC8□□□□□ -1.13
Hmgb3O54879 Tgm5-201ENSMUST00000028721 2613 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Isx-201ENSMUST00000034034 1793 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm10513-201ENSMUST00000194203 6468 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Ganc-205ENSMUST00000135074 4780 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Trrap-203ENSMUST00000100467 12479 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 CN725425-201ENSMUST00000109284 1929 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Itih1-202ENSMUST00000163118 3077 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Ube2k-207ENSMUST00000202082 4506 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Fyb-201ENSMUST00000090461 2669 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Mast4-212ENSMUST00000171791 7647 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Ribc1-201ENSMUST00000026288 1508 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Tec-203ENSMUST00000113594 2580 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Tec-202ENSMUST00000073843 2573 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Wdfy4-201ENSMUST00000061753 9681 ntAPPRIS P2 TSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Defb48-201ENSMUST00000100493 445 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Olfr31-201ENSMUST00000100872 954 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Krtap16-1-201ENSMUST00000105050 1888 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Disp2-203ENSMUST00000110843 2949 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm1848-201ENSMUST00000120711 789 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm12791-201ENSMUST00000120788 655 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm16441-201ENSMUST00000138176 924 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm16235-202ENSMUST00000149562 206 ntTSL 3 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm6038-201ENSMUST00000154310 948 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm22609-201ENSMUST00000158286 121 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm20821-202ENSMUST00000180352 684 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm17322-201ENSMUST00000181289 2169 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm6225-201ENSMUST00000181558 1700 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm9081-201ENSMUST00000182346 991 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm42657-201ENSMUST00000201746 211 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm18393-201ENSMUST00000208349 1131 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm34776-201ENSMUST00000219415 1140 ntTSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Rcan2-201ENSMUST00000044792 3237 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Arxes1-201ENSMUST00000057625 1580 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Zkscan7-201ENSMUST00000063980 4722 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Cpne8-202ENSMUST00000064391 3366 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm23680-201ENSMUST00000083162 164 ntBASIC7.99□□□□□ -1.13
Hmgb3O54879 Cdkl4-201ENSMUST00000086545 2931 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Wdr3-201ENSMUST00000052120 3432 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm16045-201ENSMUST00000123882 2969 ntTSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Scnn1a-207ENSMUST00000177329 2807 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Plp1-201ENSMUST00000033800 4699 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Tmx2-202ENSMUST00000111664 1926 ntTSL 3 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Dgcr2-202ENSMUST00000066127 3790 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Lrrfip1-203ENSMUST00000097649 3645 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Pkib-202ENSMUST00000075992 5317 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Gm12576-201ENSMUST00000135268 3036 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Pygm-202ENSMUST00000113483 2583 ntTSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Pa2g4-201ENSMUST00000026425 2432 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Zscan5b-201ENSMUST00000072662 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 Il20rb-201ENSMUST00000098458 2793 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
Hmgb3O54879 Mbnl3-201ENSMUST00000041495 1803 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
Hmgb3O54879 St6galnac2-206ENSMUST00000144398 1683 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Rad52-212ENSMUST00000162461 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Hdac9-208ENSMUST00000211107 1683 ntTSL 5 BASIC7.98□□□□□ -1.13
Hmgb3O54879 Ikzf2-207ENSMUST00000190771 2483 ntTSL 5 BASIC7.98□□□□□ -1.13
Hmgb3O54879 Klhl20-201ENSMUST00000111611 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Papolg-202ENSMUST00000102863 2171 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Tbc1d24-206ENSMUST00000168410 7683 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Nav3-201ENSMUST00000032719 9962 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
Hmgb3O54879 Nobox-201ENSMUST00000031749 1893 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Depdc5-205ENSMUST00000120902 5195 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
Hmgb3O54879 Vmn1r-ps128-201ENSMUST00000121211 1739 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Aldh1l1-201ENSMUST00000032175 3052 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Nipal4-201ENSMUST00000020679 3444 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Tnfaip1-202ENSMUST00000108277 3768 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Gucy2d-203ENSMUST00000206435 3634 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
Hmgb3O54879 Slc30a2-202ENSMUST00000105872 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm26013-201ENSMUST00000104404 119 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm14270-201ENSMUST00000118388 846 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm15968-201ENSMUST00000119342 1168 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm13408-201ENSMUST00000119822 798 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm8606-201ENSMUST00000121482 888 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm12745-201ENSMUST00000121767 214 ntBASIC7.98□□□□□ -1.13
Hmgb3O54879 Gm13935-201ENSMUST00000121859 798 ntBASIC7.98□□□□□ -1.13
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms