Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Notumos-201ENSMUST00000151998 2659 ntBASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Gm20100-201ENSMUST00000209418 2272 ntBASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 AC165080.2-201ENSMUST00000217491 1530 ntBASIC23.66■■□□□ 1.38
Brf1Q8CFK2 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Brf1Q8CFK2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
Brf1Q8CFK2 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
Brf1Q8CFK2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Brf1Q8CFK2 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC23.64■■□□□ 1.37
Brf1Q8CFK2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
Brf1Q8CFK2 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Brf1Q8CFK2 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Serp2-204ENSMUST00000228055 705 ntBASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Brf1Q8CFK2 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Gm43017-201ENSMUST00000198296 752 ntBASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Brf1Q8CFK2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Brf1Q8CFK2 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Brf1Q8CFK2 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Brf1Q8CFK2 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Brf1Q8CFK2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Brf1Q8CFK2 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Smad6-203ENSMUST00000179458 273 ntBASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Brf1Q8CFK2 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Brf1Q8CFK2 Golph3-202ENSMUST00000226517 2359 ntBASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 AC154266.1-201ENSMUST00000223190 503 ntBASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Brf1Q8CFK2 Gm42911-201ENSMUST00000199360 1630 ntBASIC23.58■■□□□ 1.36
Brf1Q8CFK2 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Brf1Q8CFK2 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Brf1Q8CFK2 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Brf1Q8CFK2 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC23.57■■□□□ 1.36
Brf1Q8CFK2 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Brf1Q8CFK2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Brf1Q8CFK2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Brf1Q8CFK2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms