Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trerf1Q8BXJ2 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trerf1Q8BXJ2 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trerf1Q8BXJ2 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trerf1Q8BXJ2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trerf1Q8BXJ2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Gm45417-201ENSMUST00000209533 758 ntBASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Trerf1Q8BXJ2 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trerf1Q8BXJ2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trerf1Q8BXJ2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.39■□□□□ 0.86
Trerf1Q8BXJ2 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trerf1Q8BXJ2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trerf1Q8BXJ2 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.37■□□□□ 0.85
Trerf1Q8BXJ2 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Mir6236-201ENSMUST00000184437 123 ntBASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trerf1Q8BXJ2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trerf1Q8BXJ2 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trerf1Q8BXJ2 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Trerf1Q8BXJ2 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trerf1Q8BXJ2 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.33■□□□□ 0.85
Trerf1Q8BXJ2 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trerf1Q8BXJ2 Gm43137-201ENSMUST00000198052 594 ntBASIC20.33■□□□□ 0.85
Trerf1Q8BXJ2 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.33■□□□□ 0.84
Trerf1Q8BXJ2 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Trerf1Q8BXJ2 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trerf1Q8BXJ2 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trerf1Q8BXJ2 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trerf1Q8BXJ2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Trerf1Q8BXJ2 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms