Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 AA386476-201ENSMUST00000098781 1665 ntBASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gm8495-201ENSMUST00000188740 694 ntBASIC20.71■□□□□ 0.91
Lig4Q8BTF7 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gm5874-201ENSMUST00000096101 508 ntBASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig4Q8BTF7 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Lig4Q8BTF7 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
Lig4Q8BTF7 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig4Q8BTF7 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig4Q8BTF7 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig4Q8BTF7 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig4Q8BTF7 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig4Q8BTF7 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig4Q8BTF7 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Gm10493-201ENSMUST00000097270 612 ntBASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig4Q8BTF7 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig4Q8BTF7 Gm27801-201ENSMUST00000184174 223 ntBASIC20.67■□□□□ 0.9
Lig4Q8BTF7 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig4Q8BTF7 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.67■□□□□ 0.9
Lig4Q8BTF7 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig4Q8BTF7 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig4Q8BTF7 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lig4Q8BTF7 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lig4Q8BTF7 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Lig4Q8BTF7 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Lig4Q8BTF7 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig4Q8BTF7 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.63■□□□□ 0.89
Lig4Q8BTF7 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.63■□□□□ 0.89
Lig4Q8BTF7 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.63■□□□□ 0.89
Lig4Q8BTF7 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig4Q8BTF7 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.63■□□□□ 0.89
Lig4Q8BTF7 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Lig4Q8BTF7 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms