Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc40Q8BI79 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc40Q8BI79 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc40Q8BI79 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc40Q8BI79 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc40Q8BI79 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc40Q8BI79 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Gm9847-201ENSMUST00000052528 599 ntBASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc40Q8BI79 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.18■□□□□ 0.82
Ccdc40Q8BI79 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc40Q8BI79 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms