Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShhQ62226 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ShhQ62226 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShhQ62226 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
ShhQ62226 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
ShhQ62226 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.16■□□□□ 0.5
ShhQ62226 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
ShhQ62226 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShhQ62226 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ShhQ62226 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.15■□□□□ 0.5
ShhQ62226 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.15■□□□□ 0.5
ShhQ62226 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.15■□□□□ 0.5
ShhQ62226 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.15■□□□□ 0.5
ShhQ62226 AV356131-201ENSMUST00000206201 750 ntBASIC18.15■□□□□ 0.5
ShhQ62226 Gm40848-201ENSMUST00000221998 324 ntBASIC18.15■□□□□ 0.5
ShhQ62226 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ShhQ62226 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShhQ62226 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShhQ62226 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShhQ62226 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ShhQ62226 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.15■□□□□ 0.5
ShhQ62226 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
ShhQ62226 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShhQ62226 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ShhQ62226 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ShhQ62226 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
ShhQ62226 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.14■□□□□ 0.49
ShhQ62226 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ShhQ62226 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.14■□□□□ 0.49
ShhQ62226 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ShhQ62226 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ShhQ62226 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
ShhQ62226 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
ShhQ62226 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.14■□□□□ 0.49
ShhQ62226 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
ShhQ62226 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.13■□□□□ 0.49
ShhQ62226 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.13■□□□□ 0.49
ShhQ62226 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ShhQ62226 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
ShhQ62226 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.12■□□□□ 0.49
ShhQ62226 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ShhQ62226 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ShhQ62226 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.12■□□□□ 0.49
ShhQ62226 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
ShhQ62226 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
ShhQ62226 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
ShhQ62226 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ShhQ62226 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
ShhQ62226 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.11■□□□□ 0.49
ShhQ62226 Gm42778-201ENSMUST00000199644 553 ntBASIC18.11■□□□□ 0.49
ShhQ62226 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ShhQ62226 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
ShhQ62226 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.1■□□□□ 0.49
ShhQ62226 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ShhQ62226 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
ShhQ62226 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ShhQ62226 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
ShhQ62226 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ShhQ62226 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms