Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.17■□□□□ 0.82
Sdc4O35988 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.16■□□□□ 0.82
Sdc4O35988 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Sdc4O35988 Gm26571-201ENSMUST00000181399 666 ntBASIC20.16■□□□□ 0.82
Sdc4O35988 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.16■□□□□ 0.82
Sdc4O35988 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.16■□□□□ 0.82
Sdc4O35988 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sdc4O35988 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Sdc4O35988 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.15■□□□□ 0.82
Sdc4O35988 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Sdc4O35988 Gm10849-201ENSMUST00000100397 618 ntBASIC20.15■□□□□ 0.82
Sdc4O35988 Gm7291-201ENSMUST00000199147 382 ntBASIC20.15■□□□□ 0.82
Sdc4O35988 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sdc4O35988 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sdc4O35988 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sdc4O35988 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.82
Sdc4O35988 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sdc4O35988 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sdc4O35988 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.14■□□□□ 0.81
Sdc4O35988 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.14■□□□□ 0.81
Sdc4O35988 Gm27405-201ENSMUST00000184201 112 ntBASIC20.14■□□□□ 0.81
Sdc4O35988 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sdc4O35988 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sdc4O35988 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Gm10033-202ENSMUST00000211874 928 ntBASIC20.13■□□□□ 0.81
Sdc4O35988 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.13■□□□□ 0.81
Sdc4O35988 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Sdc4O35988 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sdc4O35988 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Sdc4O35988 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.12■□□□□ 0.81
Sdc4O35988 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.12■□□□□ 0.81
Sdc4O35988 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.12■□□□□ 0.81
Sdc4O35988 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.12■□□□□ 0.81
Sdc4O35988 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Sdc4O35988 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sdc4O35988 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
Sdc4O35988 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.11■□□□□ 0.81
Sdc4O35988 AV356131-201ENSMUST00000206201 750 ntBASIC20.11■□□□□ 0.81
Sdc4O35988 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.11■□□□□ 0.81
Sdc4O35988 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Sdc4O35988 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Sdc4O35988 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.1■□□□□ 0.81
Sdc4O35988 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sdc4O35988 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.09■□□□□ 0.81
Sdc4O35988 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sdc4O35988 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Sdc4O35988 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
Sdc4O35988 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
Sdc4O35988 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
Sdc4O35988 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sdc4O35988 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.08■□□□□ 0.81
Sdc4O35988 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sdc4O35988 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sdc4O35988 AA386476-201ENSMUST00000098781 1665 ntBASIC20.08■□□□□ 0.81
Sdc4O35988 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Sdc4O35988 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sdc4O35988 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Sdc4O35988 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.08■□□□□ 0.8
Sdc4O35988 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Sdc4O35988 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdc4O35988 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Sdc4O35988 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sdc4O35988 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sdc4O35988 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.07■□□□□ 0.8
Sdc4O35988 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.07■□□□□ 0.8
Sdc4O35988 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms