Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Ube4aE9Q735 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Gm38205-201ENSMUST00000192243 258 ntBASIC23.7■■□□□ 1.38
Ube4aE9Q735 CT010467.1-202ENSMUST00000205406 714 ntBASIC23.7■■□□□ 1.38
Ube4aE9Q735 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Ube4aE9Q735 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Ube4aE9Q735 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ube4aE9Q735 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.68■■□□□ 1.38
Ube4aE9Q735 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Gm42555-201ENSMUST00000199304 1039 ntBASIC23.67■■□□□ 1.38
Ube4aE9Q735 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ube4aE9Q735 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Gm27011-201ENSMUST00000182352 972 ntBASIC23.66■■□□□ 1.38
Ube4aE9Q735 AC112142.1-201ENSMUST00000228796 918 ntBASIC23.66■■□□□ 1.38
Ube4aE9Q735 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ube4aE9Q735 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC23.65■■□□□ 1.38
Ube4aE9Q735 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ube4aE9Q735 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ube4aE9Q735 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ube4aE9Q735 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.64■■□□□ 1.38
Ube4aE9Q735 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.64■■□□□ 1.37
Ube4aE9Q735 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
Ube4aE9Q735 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ube4aE9Q735 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ube4aE9Q735 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC23.62■■□□□ 1.37
Ube4aE9Q735 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ube4aE9Q735 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Ube4aE9Q735 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ube4aE9Q735 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC23.61■■□□□ 1.37
Ube4aE9Q735 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
Ube4aE9Q735 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ube4aE9Q735 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ube4aE9Q735 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ube4aE9Q735 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Gm13534-201ENSMUST00000121169 513 ntBASIC23.6■■□□□ 1.37
Ube4aE9Q735 Gm12669-201ENSMUST00000122162 1009 ntBASIC23.6■■□□□ 1.37
Ube4aE9Q735 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Mir5133-201ENSMUST00000174955 77 ntBASIC23.6■■□□□ 1.37
Ube4aE9Q735 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
Ube4aE9Q735 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms