Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx56Q9D0R4 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx56Q9D0R4 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Gm43137-201ENSMUST00000198052 594 ntBASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddx56Q9D0R4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 AA386476-201ENSMUST00000098781 1665 ntBASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Ddx56Q9D0R4 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx56Q9D0R4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.6■□□□□ 0.89
Ddx56Q9D0R4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx56Q9D0R4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Ddx56Q9D0R4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx56Q9D0R4 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx56Q9D0R4 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Spcs1-204ENSMUST00000226782 949 ntBASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms