Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.46■□□□□ 0.87
Sh3rf3Q8C120 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf3Q8C120 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Sh3rf3Q8C120 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf3Q8C120 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf3Q8C120 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.45■□□□□ 0.87
Sh3rf3Q8C120 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Gm13241-201ENSMUST00000094493 780 ntBASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf3Q8C120 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf3Q8C120 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.43■□□□□ 0.86
Sh3rf3Q8C120 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf3Q8C120 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Sh3rf3Q8C120 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Gm43137-201ENSMUST00000198052 594 ntBASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Sh3rf3Q8C120 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Sh3rf3Q8C120 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Sh3rf3Q8C120 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf3Q8C120 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf3Q8C120 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf3Q8C120 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Sh3rf3Q8C120 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.39■□□□□ 0.85
Sh3rf3Q8C120 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf3Q8C120 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Sh3rf3Q8C120 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf3Q8C120 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms