Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trub1Q8C0D0 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Trub1Q8C0D0 AA386476-201ENSMUST00000098781 1665 ntBASIC20.29■□□□□ 0.84
Trub1Q8C0D0 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trub1Q8C0D0 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.27■□□□□ 0.84
Trub1Q8C0D0 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Gm43137-201ENSMUST00000198052 594 ntBASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trub1Q8C0D0 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Trub1Q8C0D0 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trub1Q8C0D0 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.25■□□□□ 0.83
Trub1Q8C0D0 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trub1Q8C0D0 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trub1Q8C0D0 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.23■□□□□ 0.83
Trub1Q8C0D0 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Trub1Q8C0D0 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trub1Q8C0D0 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms