Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC27.18■■□□□ 1.94
Usp40Q8BWR4 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Usp40Q8BWR4 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Usp40Q8BWR4 Gm15043-201ENSMUST00000118843 1543 ntBASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Usp40Q8BWR4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 CT025689.6-201ENSMUST00000224991 1104 ntBASIC27.15■■□□□ 1.94
Usp40Q8BWR4 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Usp40Q8BWR4 AA386476-201ENSMUST00000098781 1665 ntBASIC27.14■■□□□ 1.94
Usp40Q8BWR4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Usp40Q8BWR4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Usp40Q8BWR4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Usp40Q8BWR4 Gm7514-201ENSMUST00000209475 934 ntBASIC27.13■■□□□ 1.93
Usp40Q8BWR4 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC27.13■■□□□ 1.93
Usp40Q8BWR4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 AC152827.1-201ENSMUST00000221143 2189 ntBASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 AC154266.1-201ENSMUST00000223190 503 ntBASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Usp40Q8BWR4 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp40Q8BWR4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC27.11■■□□□ 1.93
Usp40Q8BWR4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC27.11■■□□□ 1.93
Usp40Q8BWR4 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC27.11■■□□□ 1.93
Usp40Q8BWR4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
Usp40Q8BWR4 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
Usp40Q8BWR4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
Usp40Q8BWR4 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Spcs1-207ENSMUST00000228767 1008 ntBASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
Usp40Q8BWR4 Gm43909-201ENSMUST00000203443 1876 ntBASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Usp40Q8BWR4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Usp40Q8BWR4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Gm12933-201ENSMUST00000120203 872 ntBASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Usp40Q8BWR4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC27.05■■□□□ 1.92
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms