Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.52■□□□□ 0.88
Hmgb4Q6P8W9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb4Q6P8W9 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb4Q6P8W9 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb4Q6P8W9 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Hmgb4Q6P8W9 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Hmgb4Q6P8W9 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Hmgb4Q6P8W9 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Golph3-202ENSMUST00000226517 2359 ntBASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb4Q6P8W9 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb4Q6P8W9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Hmgb4Q6P8W9 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb4Q6P8W9 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Gm11421-201ENSMUST00000122124 294 ntBASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb4Q6P8W9 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Gm27405-201ENSMUST00000184201 112 ntBASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Hmgb4Q6P8W9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Hmgb4Q6P8W9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Hmgb4Q6P8W9 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
Hmgb4Q6P8W9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb4Q6P8W9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Mir6236-201ENSMUST00000184437 123 ntBASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb4Q6P8W9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Hmgb4Q6P8W9 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Hmgb4Q6P8W9 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms